Publications

  • Kimball, S., M. L. Goulden, K. N. Suding, and S. Parker. 2014. Altered water and nitrogen input shifts succession in a Southern California coastal sage community. Ecological Applications 24:1390–1404. https://doi.org/10.1890/13-1313.1
  • Hynson N.A., Allison S.D., and K.K. Treseder. 2015. Quantum dots reveal shifts in organic nitrogen uptake by fungi exposed to long-term nitrogen enrichment. PLoS One 10: e0138158. doi:10.1371/journal.pone.0138158
  • Kimball, S., J. L. Funk, M. J. Spasojevic, K. N. Suding, S. Parker, and M. L. Goulden. 2016. Can functional traits predict plant community response to global change? Ecosphere 7:e01602. https://doi.org/10.1002/ecs2.1602
  • Nguyen, M. A., A. E. Ortega, Q. L. Nguyen, S. Kimball, M. L. Goulden, and J. L. Funk. 2016. Evolutionary responses of invasive grass species to variation in precipitation and soil nitrogen. Journal of Ecology 104:979–986. https://doi.org/10.1111/1365-2745.12582
  • Chase A.B., Arevalo P., Polz M.F., Berlemont R., and J.B. Martiny. 2016. Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium. Frontiers in Microbiology 7:1874. doi:10.3389/fmicb.2016.01874
  • Khalili B., O.A. Ogunseitan, M.L. Goulden, and S.D. Allison. 2016. Interactive effects of precipitation manipulation and nitrogen addition on soil properties in California grassland and shrubland. Applied Soil Ecology 107:144-153. https://doi.org/10.1016/j.apsoil.2016.05.018
  • Nelson M.B., Martiny A.C., and J.B. Martiny. 2016. Global biogeography of microbial nitrogen-cycling traits in soil. Proceedings of the National Academy of Sciences 113: 8033–8040. doi:10.1073/pnas.1601070113
  • Allison S.D. and M.L. Goulden. 2017. Consequences of drought tolerance traits for microbial decomposition in the DEMENT model. Soil Biology and Biochemistry 107: 104-113. doi:10.1016/j.soilbio.2017.01.001
  • Baker N.R. and S.D. Allison. 2017. Extracellular enzyme kinetics and thermodynamics along a climate gradient in southern California. Soil Biology and Biochemistry 114:82-92.
  • Chase A.B., Karaoz U., Brodie E.L., Gomez-Lunar Z., Martiny A.C., and J.B. Martiny. 2017. Microdiversity of an abundant terrestrial bacterium encompasses extensive variation in ecologically relevant traits. mBio 8: e01809–17. doi:10.1128/mBio.01809-17
  • Dolan K.L., Peña J., Allison S.D., and J.B. Martiny. 2017. Phylogenetic conservation of substrate use specialization in leaf litter bacteria. PLoS ONE 12: e0174472. doi:10.1371/journal.pone.0174472
  • Evans S., Martiny J.B., and S.D. Allison. 2017. Effects of dispersal and selection on stochastic assembly in microbial communities. ISME Journal 11: 176–185. doi.10.1038/ismej.2016.96
  • Homyak P.M., Allison S.D., Huxman T.E., Goulden M.L., and K.K. Treseder. 2017. Effects of drought manipulation on soil nitrogen cycling: A meta-analysis. Journal of Geophysical Research Biogeosciences, 122: 3260-3272. https://doi.org/ 10.1002/2017JG004146.
  • Albright M.B.N. and J.B.H. Martiny. 2018. Is throwing an apple core out of the car littering? Microbial communities in natural composting. Frontiers for Young Minds 6:13. doi: 10.3389/frym.2018.00013.
  • Baker N.R., B. Khalili, J.B.H. Martiny, and S.D. Allison. 2018. Microbial decomposers not constrained by climate history along a Mediterranean climate gradient in southern California. Ecology 99:1441–1452. https://doi.org/10.1002/ecy.2345
  • Chase A.B., Z. Gomez-Lunar, A.E.Lopez, J. Li, S.D. Allison, A.C. Martiny and J.B.H. Martiny. 2018. Emergence of soil bacterial ecotypes along a climate gradient. Environmental Microbiology 20: 4112-4126. https://doi.org/10.1111/1462-2920.14405
  • Glassman S.I., C. Weihe, J. Li, M.B.N. Albright, C.I. Looby, A.C. Martiny, K.K. Treseder, S.D. Allison and J.B.H. Martiny. 2018. Decomposition responses to climate depend on microbial community composition. Proceedings of the National Academy of Sciences 115:11994-11999. https://doi.org/10.1073/pnas.1811269115
  • Treseder K.K., Berlemont R., Allison S.D., and A.C. Martiny. 2018. Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition. PLoS One 13: e0206441. doi:10.1371/journal.pone.0206441
  • Treseder K.K., Berlemont R., Allison S.D., and A.C. Martiny. 2018. Nitrogen enrichment shifts functional genes related to nitrogen and carbon acquisition in the fungal community. Soil Biology and Biochemistry 123: 87–96. doi:10.1016/j.soilbio.2018.05.014
  • Chase A.B., Arevalo P., Brodie E.L., Polz M.F., Karaoz U., and J.B. Martiny. 2019. Maintenance of sympatric and allopatric populations in free-living terrestrial bacteria. mBio 10: e02361–19. doi:10.1101/644468
  • Khalili B., Weihe C., Kimball S., Schmidt K.T., and J.B. Martiny. 2019. Optimization of a method to quantify soil bacterial abundance by flow cytometry. mSphere 4: e00435–19. doi:10.1128/mSphere.00435-19
  • Ramin K.I., and S.D. Allison. 2019. Bacterial Tradeoffs in Growth Rate and Extracellular Enzymes. Frontiers in Microbiology 10: 2956. doi:10.3389/fmicb.2019.02956
  • Isobe K., N.J. Bouskill, E.L. Brodie, E.A. Sudderth and J.B.H. Martiny. 2020. Phylogenetic conservation of soil bacterial responses to simulated global changes. Philosophical Transactions of the Royal Society B: Biological Sciences 1798: 20190242 http://doi.org/10.1098/rstb.2019.0242
  • Malik A.A., Martiny J.B., Brodie E.L., Martiny A.C., Treseder K.K., et al. 2020. Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. ISME J. 14, 1–9. doi:10.1038/s41396-019-0510-0
  • Nisson D.M., and Allison S.D. 2020. Litter microbial respiration and enzymatic resistance to drought stress. Elementa: Science of the Anthropocene, 8. doi:10.1525/elementa.442
  • Alster C.J., Allison S.D., Glassman S.I., Martiny A.C. and Treseder K.K. 2021. Exploring Trait Trade-Offs for Fungal Decomposers in a Southern California Grassland. Frontiers in Microbiology 12. doi:10.3389/fmicb.2021.655987
  • Alster C.J., Allison S.D., Johnson N.G., Glassman S.I. and Treseder K.K. 2021. Phenotypic plasticity of fungal traits in response to moisture and temperature. ISME Communications 1: 43. doi:10.1038/s43705-021-00045-9
  • Chase A.B., Weihe C. and Martiny J.B. 2021. Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient. Proceedings of the National Academy of Sciences 118. doi:10.1073/pnas.2101254118
  • Finks S.S., Weihe C., Kimball S., Allison S.D., Martiny A.C., Treseder K.K.  and Martiny J.B. 2021. Microbial community response to a decade of simulated global changes depends on the plant community. Elementa: Science of the Anthropocene, 9. doi:10.1525/elementa.2021.00124
  • Lovero, K. G., & Treseder, K. K. 2021. Trade-Offs Between Growth Rate and Other Fungal Traits. Frontiers in Forests and Global Change, 4. doi:10.3389/ffgc.2021.756650
  • Treseder, K. K., Alster, C. J., Cat, L. A., Gorris, M. E., Kuhn, A. L., Lovero, K. G., . . . Solly, E. F. 2021. Nutrient and stress tolerance traits linked to fungal responses to global change: Four case studies. Elementa: Science of the Anthropocene, 9. doi:10.1525/elementa.2020.00144
  • Wang, B., and S. D. Allison. 2021. Drought legacies mediated by trait tradeoffs in soil microbiomes. Ecosphere 12:e03562. https://doi.org/10.1002/ecs2.3562
  • Kimball, S., J. Rath, J. E. Coffey, M. R. Perea-Vega, M. Walsh, N. M. Fiore, P. M. Ta, K. T. Schmidt, M. L. Goulden, and S. D. Allison. 2024. Long-term drought promotes invasive species by reducing wildfire severity. Ecology 105:e4265. https://doi.org/10.1002/ecy.4265
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